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Federal Taxation of Entities II: S Corporations, Partnerships, LLCs and Tax-Exempt Organizations (Area V.C–V.F)

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Pass-through entities are tested in two ways. First, classification: can this corporation be an S corporation, and what is this LLC for tax purposes? Second, flow-through arithmetic: split the entity's items into ordinary business income and separately stated items, then roll each owner's basis forward. The basis roll-forward is where most candidates lose marks, so this chapter spends the most time on it.

V.C S corporations

V.C.1 Eligibility and election

A corporation can elect S status only if it is a small business corporation: a domestic corporation, not an ineligible corporation, that does not[1]

  • have more than 100 shareholders (a husband and wife, and all members of a family, are treated as one shareholder[1]);
  • have a shareholder that is not an individual, other than an estate, certain trusts and certain exempt organizations — so no corporations or partnerships as shareholders;
  • have a nonresident alien shareholder; or
  • have more than one class of stock. Differences in voting rights among common shares do not create a second class[1]; differences in rights to distributions or liquidation proceeds do.

Making the election. The corporation files Form 2553 with the consents of its shareholders — for an election filed before its effective date, every shareholder who owns stock on the day the election is made must consent[2]. An election is effective for a tax year if made during the preceding year or on or before the 15th day of the third month of the tax year[3]; a later election generally takes effect the following year. Relief for late elections is available.

Termination.

  • Revocation — by shareholders holding more than one-half of the shares on the day of revocation[3].
  • Ceasing to qualify — for example, a 101st shareholder, a corporate shareholder or a second class of stock; the termination is effective on the date of the terminating event.
  • Excess passive investment income — the election terminates if the corporation has accumulated earnings and profits (from C corporation years) at the close of each of three consecutive years and passive investment income is more than 25% of gross receipts in each of those years[3].

After a termination, the corporation generally cannot re-elect until its fifth tax year after the year the termination took effect[3].

V.C.2 Ordinary business income and separately stated items

An S corporation generally pays no income tax. Each shareholder takes into account a pro rata share of the corporation's items of income (including tax-exempt income), loss, deduction and credit whose separate treatment could affect any shareholder's tax, and of its nonseparately computed income or loss[4].

Ordinary business income (Form 1120-S page 1)Separately stated (Schedule K / K-1)
Sales less cost of goods soldInterest, dividends and royalties (portfolio income)
Salaries and wages, including reasonable compensation to shareholder-employeesNet rental real estate income or loss
Rent, taxes, repairs, depreciation (MACRS)Capital gains and losses; §1231 gains and losses
Advertising, employee benefitsCharitable contributions
§179 deduction
Tax-exempt interest (affects basis)
Not deductible anywhere: fines, 50% of meals, federal income tax, entertainmentNondeductible expenses (reduce basis)

Pro rata share. Each item is assigned equally to each day of the year and then divided among the shares outstanding on that day[5] — so a shareholder who owned 40% for half the year is allocated 20% of the year's items.

The accumulated adjustments account (AAA)

The AAA tracks S corporation earnings that have been taxed to shareholders but not yet distributed. It is adjusted like stock basis, with two differences: no adjustment for tax-exempt income and its related expenses, and the AAA can go negative (the "but not below zero" limit in the basis rules is disregarded)[6]. Distributions reduce the AAA but cannot make it negative.

Distributions.

  • S corporation with no accumulated E&P: a distribution is tax-free to the extent of the shareholder's stock basis; any excess is gain from the sale or exchange of property[6].
  • S corporation with accumulated E&P from C years: distributions come first from the AAA (tax-free to the extent of basis), then as a dividend to the extent of accumulated E&P, then as a return of remaining basis and gain[6].

V.C.3 Shareholder's stock and debt basis

A shareholder's stock basis starts with the amount paid (or basis of property contributed). Each year it is[7]:

  1. increased by the shareholder's share of all income items — separately stated income, including tax-exempt income, and nonseparately computed income;
  2. decreased (not below zero) by non-taxable distributions, by losses and deductions, and by nondeductible, noncapital expenses[7].

Under the regulations the order is: increases, then distributions, then nondeductible expenses, then losses and deductions. Because distributions come before losses, a distribution is tested against basis before that year's losses reduce it.

Debt basis. A shareholder who lends money directly to the S corporation has basis in that debt. Losses that exceed stock basis reduce debt basis (not below zero)[7]. In later years, net increases restore debt basis first, before any increase to stock basis[7]. If the corporation repays a loan whose basis has been reduced, part of each repayment is income to the shareholder. Losses above combined stock and debt basis carry forward indefinitely[4].

A shareholder's guarantee of a bank loan to the corporation does not create debt basis; only a loan the shareholder actually made to the corporation does.

V.D Partnerships

V.D.1 Ordinary business income, separately stated items and guaranteed payments

A partnership files Form 1065 but pays no income tax. Its items flow to the partners on Schedule K-1 in the same two groups as an S corporation's: ordinary business income (loss) and separately stated items. The difference is guaranteed payments.

Guaranteed payments — payments to a partner for services or for the use of capital, determined without regard to the partnership's income — are treated as made to a non-partner for purposes of gross income and the deduction for business expenses[8]. So the partnership deducts them in computing ordinary business income, and the partner reports them as ordinary income in addition to his or her distributive share[9]. Guaranteed payments are not QBI (Chapter 5).

Contributions

No gain or loss is recognized by the partnership or the partner when property is contributed in exchange for a partnership interest[10]. The partner's initial basis in the interest (outside basis) is the money plus the adjusted basis of the property contributed[11]; the partnership's basis in the property (inside basis) is the partner's adjusted basis carried over[12].

V.D.2 Basis of a partner's interest

A partner's basis is[13]:

  • increased by the distributive share of partnership taxable income, tax-exempt income and additional contributions;
  • decreased (not below zero) by distributions, the distributive share of losses, and nondeductible expenditures not chargeable to capital[13].

Liabilities. An increase in a partner's share of partnership liabilities is treated as a contribution of money by the partner, increasing basis; a decrease is treated as a distribution of money, decreasing basis[14]. This is the key difference from an S corporation, where a shareholder gets no basis for the corporation's bank debt.

Distributions (non-liquidating).

  • A partner recognizes gain only to the extent money distributed exceeds his or her basis immediately before the distribution; loss is not recognized in a current distribution[15].
  • Property distributed takes the partnership's basis, but not more than the partner's outside basis reduced by any money distributed in the same transaction[16].

A partner's loss deduction is limited to outside basis at year-end (Chapter 6)[17].

Reviewing Form 1065 and Form 1120-S

The blueprint's review tasks ask you to classify items from a trial balance as ordinary, separately stated or nondeductible. Common errors: portfolio interest or dividends netted into ordinary income; charitable contributions deducted on page 1; §179 deducted on page 1 instead of passing through; guaranteed payments omitted from the deduction list (partnership) or treated as distributions; a shareholder's health insurance or a shareholder's salary misclassified; fines and the nondeductible part of meals deducted.

V.E Limited liability companies — classification

Under the "check-the-box" regulations, a domestic eligible entity that does not elect otherwise is a partnership if it has two or more members, or is disregarded as separate from its owner if it has a single owner[18]. Either kind of LLC may elect to be taxed as a corporation on Form 8832[19], and an LLC taxed as a corporation may then elect S status if it meets the S requirements. A disregarded single-member LLC is still treated as a separate entity for employment and certain excise taxes[19].

V.F Tax-exempt organizations

Section 501(c) lists the types of exempt organization. The ones REG expects you to recall:

SectionType
501(c)(3)Organized and operated exclusively for religious, charitable, scientific, literary or educational purposes (and certain others); no private inurement; no substantial lobbying; no political campaign activity[20]
501(c)(4)Civic leagues and social welfare organizations
501(c)(5)Labor, agricultural and horticultural organizations
501(c)(6)Business leagues (trade associations, chambers of commerce)
501(c)(7)Social and recreation clubs

Source for (c)(4)–(c)(7):[21].

Only contributions to 501(c)(3)-type organizations (and certain others, such as government units) are generally deductible charitable contributions. A 501(c)(3) organization is either a public charity or a private foundation; private foundations face additional excise taxes.

Unrelated business income tax. An exempt organization pays tax at corporate rates on its unrelated business taxable income[22] — gross income from an unrelated trade or business regularly carried on, less directly connected deductions[23]. A trade or business is unrelated if its conduct is not substantially related (apart from the need for income) to the organization's exempt purpose[24]. A museum's gift shop selling reproductions of its collection is related; the same museum running a commercial car wash every weekend is not.

Worked example: a partner's year from K-1 to basis

Cedar Partners has three equal general partners. At January 1, Mia's outside basis is $50,000, which includes her one-third share ($20,000) of the partnership's $60,000 of recourse bank debt. During the year:

ItemPartnership totalMia's one-third
Ordinary business income (after a $36,000 guaranteed payment to Mia)$90,000$30,000
Guaranteed payment to Mia for services$36,000$36,000 (hers alone)
Interest income$6,000$2,000
Tax-exempt interest$3,000$1,000
Charitable contributions$9,000$3,000
Nondeductible penalties$1,500$500
Bank debt at December 31$30,000$10,000
Cash distribution to Mia$25,000

Mia's return. Ordinary income $30,000 plus the $36,000 guaranteed payment, both reported as ordinary income[9]; interest $2,000; a $3,000 charitable contribution that she claims on her own return under the individual charitable rules (Chapter 5).

Mia's outside basis at December 31.

StepAmount
Beginning basis$50,000
+ Distributive share of taxable income: ordinary $30,000 + interest $2,000$32,000
+ Tax-exempt interest$1,000
− Decrease in share of liabilities ($20,000 → $10,000), treated as a distribution of money($10,000)
− Cash distribution($25,000)
− Charitable contribution (a separately stated deduction item)($3,000)
− Nondeductible penalties($500)
Ending basis$44,500

Sources: basis increases for taxable and tax-exempt income and decreases for distributions, losses and nondeductible expenditures[13]; a decrease in a partner's share of liabilities is a deemed distribution of money[14]. The guaranteed payment does not change basis: it is paid to Mia as if she were not a partner, and the partnership deducted it before computing the ordinary income she was allocated[8]. Because the total money distributed ($35,000 including the deemed distribution) never exceeds her basis, she recognizes no gain[15].

Choosing among entities — the tax comparison

FeatureC corporationS corporationPartnership / multi-member LLC
Entity-level income taxYes, 21%Generally noNo
Owners taxed onDividends when paidPro rata share of income, whether or not distributedDistributive share, whether or not distributed
Allocation of itemsNot applicableStrictly per share, per dayBy the partnership agreement
Owners' basis includes entity debtNoNo — only loans the shareholder makesYes — share of partnership liabilities
Ownership limitsNone≤ 100 shareholders; eligible shareholders; one class of stockNone
Payments to owner-workersDeductible salaryReasonable salary, subject to payroll taxGuaranteed payments
LossesStay in the corporation (NOL)Pass through, limited by stock and debt basisPass through, limited by outside basis

Worked example: an S corporation with C-corporation earnings and profits

Birch Inc. was a C corporation until 2023 and has $30,000 of accumulated E&P from those years. At the end of 2026, before distributions, its AAA is $50,000. Its sole shareholder, whose stock basis is $90,000, receives a $100,000 cash distribution.

  1. From AAA: $50,000 — tax-free to the extent of basis, reducing basis to $40,000[6].
  2. Then from accumulated E&P: $30,000 — a dividend[6].
  3. Remainder: $20,000 — applied against remaining basis ($40,000 → $20,000), tax-free[6].

Result: $30,000 dividend income; stock basis $20,000; AAA zero. Had Birch never been a C corporation, the whole $100,000 would have been measured only against basis: $90,000 tax-free and $10,000 capital gain.

Sources cited in this excerpt

  1. 26 U.S. Code § 1361 - S corporation defined. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/1361
  2. Instructions for Form 2553, Election by a Small Business Corporation (Rev. December 2020). Internal Revenue Service, 2020-12. https://www.irs.gov/pub/irs-pdf/i2553.pdf
  3. 26 U.S. Code § 1362 - Election; revocation; termination. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/1362
  4. 26 U.S. Code § 1366 - Pass-thru of items to shareholders. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/1366
  5. 26 U.S. Code § 1377 - Definitions and special rule. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/1377
  6. 26 U.S. Code § 1368 - Distributions. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/1368
  7. 26 U.S. Code § 1367 - Adjustments to basis of stock of shareholders, etc. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/1367
  8. 26 U.S. Code § 707 - Transactions between partner and partnership. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/707
  9. Publication 541, Partnerships (Rev. December 2025). Internal Revenue Service, 2025-12. https://www.irs.gov/pub/irs-pdf/p541.pdf
  10. 26 U.S. Code § 721 - Nonrecognition of gain or loss on contribution. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/721
  11. 26 U.S. Code § 722 - Basis of contributing partner’s interest. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/722
  12. 26 U.S. Code § 723 - Basis of property contributed to partnership. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/723
  13. 26 U.S. Code § 705 - Determination of basis of partner’s interest. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/705
  14. 26 U.S. Code § 752 - Treatment of certain liabilities. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/752
  15. 26 U.S. Code § 731 - Extent of recognition of gain or loss on distribution. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/731
  16. 26 U.S. Code § 732 - Basis of distributed property other than money. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/732
  17. 26 U.S. Code § 704 - Partner’s distributive share. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/704
  18. 26 CFR § 301.7701-3 - Classification of certain business entities. Legal Information Institute, Cornell Law School (e-CFR), current text as retrieved. https://www.law.cornell.edu/cfr/text/26/301.7701-3
  19. Limited liability company (LLC). Internal Revenue Service, page as retrieved. https://www.irs.gov/businesses/small-businesses-self-employed/limited-liability-company-llc
  20. 26 U.S. Code § 501 - Exemption from tax on corporations, certain trusts, etc. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/501
  21. Other tax-exempt organizations. Internal Revenue Service, page as retrieved. https://www.irs.gov/charities-non-profits/other-tax-exempt-organizations
  22. 26 U.S. Code § 511 - Imposition of tax on unrelated business income of charitable, etc., organizations. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/511
  23. 26 U.S. Code § 512 - Unrelated business taxable income. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/512
  24. 26 U.S. Code § 513 - Unrelated trade or business. Legal Information Institute, Cornell Law School (U.S. Code), current text as retrieved. https://www.law.cornell.edu/uscode/text/26/513
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